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I didn't even know there was Print what: Key Assignments. Some of my customized shortcuts still don't show up in the Print What either.

Here is a catch though that I forgot to mention in th OP: these shortcut keys are assigned to macros residing in another .DOT file. I assigned shortcut keys to them by going into the Customization dialogue box > Keyboard > Macros. Is this why these keyboard shortcuts are not appearing in either ListCommands or PrintWhat?