Maybe .... (Not tested)
Code:
Sub switchNotes()
Dim oTarget As Presentation
Dim oSource As Presentation
Dim i As Integer
On Error Resume Next
Set oTarget = Presentations("TEST2.pptx")
Set oSource = Presentations("TEST1.pptx")
For i = 1 To oSource.Slides.Count
oSource.Slides(i).NotesPage.Shapes(2) _
.TextFrame.TextRange.Copy
oTarget.Slides(i).NotesPage.Shapes(2) _
.TextFrame.TextRange.Paste
Next i
End Sub